STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_4194Bacterial regulatory s, luxR family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (351 aa)    
Predicted Functional Partners:
OI25_4193
[T] COG0642 Signal transduction histidine kinase.
 
 
0.887
OI25_2058
Response regulator; [T] COG0642 Signal transduction histidine kinase.
 
 0.867
urtA
Periplasmic binding domain protein; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.782
OI25_4204
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.762
OI25_4186
cxxC_CxxC_SSSS: regulatory, FmdB family domain protein.
 
     0.740
OI25_4916
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.725
urtC
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.713
OI25_1473
[T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.712
urtB
urea_trans_UrtB: urea ABC transporter, permease protein UrtB; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
     0.711
OI25_4265
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.708
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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