STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_4285Carbohydrate-selective porin, OprB family protein; [M] COG3659 Carbohydrate-selective porin. (503 aa)    
Predicted Functional Partners:
OI25_4286
SMP-30/Gluconolaconase/LRE-like region family protein.
 
     0.883
OI25_4000
[M] COG3203 Outer membrane protein (porin).
  
  
 0.627
OI25_650
[M] COG3203 Outer membrane protein (porin).
  
  
 0.627
OI25_7659
[M] COG3203 Outer membrane protein (porin).
  
  
 0.621
OI25_6208
[M] COG3203 Outer membrane protein (porin).
  
  
 0.616
hpnJ
Radical SAM superfamily protein; [C] COG1032 Fe-S oxidoreductase.
  
     0.609
OI25_6519
[M] COG3203 Outer membrane protein (porin).
  
  
 0.608
OI25_6889
csbD-like family protein; [S] COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
     0.602
OI25_3663
[M] COG3203 Outer membrane protein (porin).
  
  
 0.599
OI25_4287
Dyp_perox_fam: Dyp-type peroxidase family protein; [P] COG2837 Predicted iron-dependent peroxidase.
 
     0.581
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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