STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_4615FAD dependent oxidoreductase family protein; [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (589 aa)    
Predicted Functional Partners:
OI25_4613
FAD binding domain protein; [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
  
 
0.983
OI25_4611
2Fe-2S iron-sulfur cluster binding domain protein; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
 0.981
OI25_4592
Rieske [2Fe-2S] domain protein; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
  
 0.978
OI25_4612
[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.976
OI25_4583
Nuclear transport factor 2 domain protein.
 
  
  0.974
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit; [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
  
 0.961
OI25_4616
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein; [I] COG1960 Acyl-CoA dehydrogenases.
 
 
 0.951
sdhB
dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
  
 0.896
OI25_7447
dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; [C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
  
 0.896
OI25_359
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.887
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.