Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
OI25_1426 | OI25_4426 | Hypothetical protein. | Major Facilitator Superfamily protein. | 0.737 |
OI25_1426 | OI25_4490 | Hypothetical protein. | [M] COG3203 Outer membrane protein (porin). | 0.768 |
OI25_1426 | OI25_4696 | Hypothetical protein. | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.420 |
OI25_1426 | OI25_6473 | Hypothetical protein. | Rhamnosyltran: rhamnosyltransferase family protein; [R] COG1216 Predicted glycosyltransferases. | 0.519 |
OI25_1712 | OI25_4490 | NAD dependent epimerase/dehydratase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases. | [M] COG3203 Outer membrane protein (porin). | 0.429 |
OI25_1712 | OI25_4696 | NAD dependent epimerase/dehydratase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases. | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.456 |
OI25_4426 | OI25_1426 | Major Facilitator Superfamily protein. | Hypothetical protein. | 0.737 |
OI25_4426 | OI25_4490 | Major Facilitator Superfamily protein. | [M] COG3203 Outer membrane protein (porin). | 0.724 |
OI25_4426 | OI25_4696 | Major Facilitator Superfamily protein. | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.639 |
OI25_4426 | OI25_6473 | Major Facilitator Superfamily protein. | Rhamnosyltran: rhamnosyltransferase family protein; [R] COG1216 Predicted glycosyltransferases. | 0.528 |
OI25_4490 | OI25_1426 | [M] COG3203 Outer membrane protein (porin). | Hypothetical protein. | 0.768 |
OI25_4490 | OI25_1712 | [M] COG3203 Outer membrane protein (porin). | NAD dependent epimerase/dehydratase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.429 |
OI25_4490 | OI25_4426 | [M] COG3203 Outer membrane protein (porin). | Major Facilitator Superfamily protein. | 0.724 |
OI25_4490 | OI25_4524 | [M] COG3203 Outer membrane protein (porin). | Phospholipase D family protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes. | 0.435 |
OI25_4490 | OI25_4696 | [M] COG3203 Outer membrane protein (porin). | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.421 |
OI25_4490 | OI25_6473 | [M] COG3203 Outer membrane protein (porin). | Rhamnosyltran: rhamnosyltransferase family protein; [R] COG1216 Predicted glycosyltransferases. | 0.504 |
OI25_4524 | OI25_4490 | Phospholipase D family protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes. | [M] COG3203 Outer membrane protein (porin). | 0.435 |
OI25_4524 | OI25_4696 | Phospholipase D family protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes. | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.483 |
OI25_4524 | OI25_6473 | Phospholipase D family protein; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes. | Rhamnosyltran: rhamnosyltransferase family protein; [R] COG1216 Predicted glycosyltransferases. | 0.476 |
OI25_4695 | OI25_4696 | DSBA-like thioredoxin domain protein; [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis. | Cupin domain protein; [S] COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. | 0.485 |
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