STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_4775Conserved hypothetical protein; [R] COG3450 Predicted enzyme of the cupin superfamily. (114 aa)    
Predicted Functional Partners:
OI25_4774
Succinylglutamate desuccinylase / Aspartoacylase family protein.
       0.604
OI25_1021
Conserved hypothetical protein; [S] COG4460 Uncharacterized protein conserved in bacteria.
  
     0.587
OI25_5192
Conserved hypothetical protein; [R] COG3450 Predicted enzyme of the cupin superfamily.
  
     0.569
OI25_4773
TTC: tartrate dehydrogenase; [CE] COG0473 Isocitrate/isopropylmalate dehydrogenase.
  
    0.518
OI25_5207
Conserved hypothetical protein; [S] COG5455 Predicted integral membrane protein.
  
     0.469
OI25_194
hutD family protein; [S] COG3758 Uncharacterized protein conserved in bacteria.
  
     0.457
OI25_4059
Heavy-metal resistance family protein; [S] COG5612 Predicted integral membrane protein.
  
     0.440
OI25_6722
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.435
OI25_6755
ABC transporter, phosphonate, periplasmic substrate-binding family protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
  
     0.435
OI25_5460
Conserved hypothetical protein; [S] COG3813 Uncharacterized protein conserved in bacteria.
  
     0.412
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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