STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5180Hypothetical protein. (69 aa)    
Predicted Functional Partners:
OI25_5181
RND_mfp: efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.941
OI25_5179
Aluminum activated malate transporter family protein; [S] COG1289 Predicted membrane protein.
 
   
 0.925
OI25_5178
Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators.
 
     0.892
OI25_5182
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein; [MU] COG1538 Outer membrane protein.
 
   
 0.862
OI25_3941
NMT1-like family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
     0.549
OI25_2628
RND_mfp: efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.524
OI25_1600
Hypothetical protein.
  
     0.511
OI25_4319
Fusaric acid resistance family protein; [S] COG1289 Predicted membrane protein.
 
   
 0.489
OI25_5176
AAA domain family protein; [T] COG0467 RecA-superfamily ATPases implicated in signal transduction.
 
     0.487
OI25_5177
Response regulator; [T] COG0642 Signal transduction histidine kinase.
 
     0.483
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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