STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5326Bacterial extracellular solute-binding family protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein. (349 aa)    
Predicted Functional Partners:
OI25_5325
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  
 0.920
OI25_5324
Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  
 0.917
potA-4
Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.894
OI25_60
Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  
 0.822
OI25_6417
Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  
 0.610
OI25_6418
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  
 0.537
OI25_6713
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  
 0.524
OI25_3248
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  
 0.514
OI25_4118
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
  
 0.491
OI25_4119
Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
  
 0.490
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.