STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5336Hypothetical protein. (144 aa)    
Predicted Functional Partners:
OI25_4631
Sulfite exporter TauE/SafE family protein; [R] COG0730 Predicted permeases.
 
 
   0.600
OI25_6974
Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
    0.560
OI25_6235
Formyl transferase family protein.
  
    0.539
OI25_3557
Glycosyl transferases group 1 family protein.
  
     0.529
nadD
Cytidylyltransferase family protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.517
OI25_173
Rhodanese-like domain protein; [P] COG0607 Rhodanese-related sulfurtransferase.
 
    0.515
dehII-3
HAD_type_II: haloacid dehalogenase, type II; [R] COG1011 Predicted hydrolase (HAD superfamily).
 
     0.494
OI25_2327
Hypothetical protein.
  
     0.472
OI25_5337
Flavin reductase like domain protein; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.462
OI25_1077
CHRD domain protein.
  
     0.459
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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