STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pld1Pyridoxal 4-dehydrogenase; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (346 aa)    
Predicted Functional Partners:
OI25_5367
Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
 0.996
OI25_1266
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
    
 0.806
OI25_5366
Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
   0.708
OI25_5369
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein; [G] COG2721 Altronate dehydratase.
 
     0.665
OI25_6828
Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
 0.644
OI25_5370
SAF domain protein; [G] COG2721 Altronate dehydratase.
 
     0.585
OI25_2244
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
 0.525
OI25_5365
Ureidoglycolate lyase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
    0.519
OI25_74
Aldo/keto reductase family protein; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.498
OI25_5373
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.483
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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