STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5565YCII-related domain protein; [S] COG3795 Uncharacterized protein conserved in bacteria. (115 aa)    
Predicted Functional Partners:
OI25_5569
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain.
 
     0.844
OI25_5937
Sigma-70 region 2 family protein; [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.783
OI25_5566
YCII-related domain protein; [S] COG3795 Uncharacterized protein conserved in bacteria.
 
   
0.683
OI25_5568
Glyoxalase-like domain protein; [R] COG3607 Predicted lactoylglutathione lyase.
 
     0.555
OI25_5567
Polyketide cyclase / dehydrase and lipid transport family protein.
 
     0.509
OI25_5564
Glycine zipper 2TM domain protein.
       0.470
OI25_4372
Glyoxalase-like domain protein; [S] COG2764 Uncharacterized protein conserved in bacteria.
 
    0.465
OI25_5865
Conserved hypothetical protein; [S] COG4312 Uncharacterized protein conserved in bacteria.
 
    0.464
OI25_493
Glyoxalase-like domain protein; [S] COG2764 Uncharacterized protein conserved in bacteria.
 
    0.446
OI25_203
ahpC/TSA family protein; [S] COG4312 Uncharacterized protein conserved in bacteria.
 
    0.435
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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