STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5781Bacterial extracellular solute-binding family protein; [G] COG1653 ABC-type sugar transport system, periplasmic component. (406 aa)    
Predicted Functional Partners:
OI25_5779
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
 
 0.911
OI25_5780
Binding--dependent transport system inner membrane component family protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.899
OI25_2173
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
 
 0.882
OI25_2172
Binding--dependent transport system inner membrane component family protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.868
OI25_5777
ABC transporter family protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.777
OI25_6120
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
 
 0.731
OI25_6121
Binding--dependent transport system inner membrane component family protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.703
OI25_4951
Binding--dependent transport system inner membrane component family protein; [G] COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.694
OI25_4950
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
 
 0.686
OI25_4498
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
 
 0.673
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.