Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
OI25_1816 | OI25_3287 | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | 0.415 |
OI25_1816 | OI25_5857 | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | 0.415 |
OI25_1816 | OI25_5858 | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. | 0.479 |
OI25_3287 | OI25_1816 | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | 0.415 |
OI25_3287 | OI25_5857 | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | 0.744 |
OI25_5857 | OI25_1816 | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | 0.415 |
OI25_5857 | OI25_3287 | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | 0.744 |
OI25_5857 | OI25_5858 | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. | 0.572 |
OI25_5858 | OI25_1816 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. | Glutamine amidotransferases class-II family protein; [E] COG0069 Glutamate synthase domain 2. | 0.479 |
OI25_5858 | OI25_5857 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. | asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. | 0.572 |