STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_589Sigma-70, region 4 family protein; [L] COG4584 Transposase and inactivated derivatives. (516 aa)    
Predicted Functional Partners:
OI25_590
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.944
OI25_7338
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.799
OI25_7732
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.799
OI25_7358
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.797
OI25_7384
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.797
OI25_7400
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.795
OI25_7391
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.790
OI25_7395
Homeo-like domain protein; [L] COG4584 Transposase and inactivated derivatives.
 
     0.651
OI25_7403
Integrase core domain protein; [L] COG4584 Transposase and inactivated derivatives.
 
     0.526
OI25_591
[V] COG1715 Restriction endonuclease.
       0.474
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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