STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_5912Lysozyme family protein; Gene 25-like; [S] COG3518 Uncharacterized protein conserved in bacteria. (144 aa)    
Predicted Functional Partners:
OI25_5913
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).
 
  
 0.948
OI25_5915
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein; [S] COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.939
OI25_5914
ompA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
  
 0.907
OI25_5916
Conserved hypothetical protein; [S] COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.888
OI25_5925
impA-related N-terminal family protein; [S] COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.874
OI25_5927
Conserved hypothetical protein; [S] COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.872
OI25_5919
vgr_GE: Rhs element Vgr family protein; [S] COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.866
vasA-3
Conserved hypothetical protein; [S] COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.866
OI25_5928
Type VI secretion lipofamily protein; [S] COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.863
OI25_5924
Intracellular multiplication and macrophage-killing family protein; [S] COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.832
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.