STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_603prkA AAA domain protein; [T] COG2766 Putative Ser protein kinase. (180 aa)    
Predicted Functional Partners:
OI25_3299
spoVR like family protein; [S] COG2719 Uncharacterized conserved protein.
 
  
 0.962
OI25_3298
Hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.960
OI25_925
Hypothetical protein.
   
    0.697
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.631
morA
Morphine 6-dehydrogenase; [R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
   
    0.621
OI25_3919
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.616
OI25_986
[P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
    0.547
OI25_2244
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
   
    0.513
OI25_2057
Hypothetical protein.
   
    0.497
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.465
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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