STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_6551Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases. (220 aa)    
Predicted Functional Partners:
OI25_6550
Conserved hypothetical protein; [S] COG3395 Uncharacterized protein conserved in bacteria.
  
 0.981
OI25_6549
NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase family protein; [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
 
  
 0.857
OI25_6553
3-beta hydroxysteroid dehydrogenase/isomerase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 
 
 0.794
OI25_6552
Xylose isomerase-like TIM barrel family protein; [G] COG3622 Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.749
OI25_6153
Conserved hypothetical protein; [S] COG3395 Uncharacterized protein conserved in bacteria.
 
  
 0.710
OI25_6548
Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators.
 
     0.622
OI25_7777
Bacterial extracellular solute-binding family protein; [P] COG0725 ABC-type molybdate transport system, periplasmic component.
 
    0.538
OI25_6152
[G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family.
 
  
 0.497
OI25_7782
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
     0.441
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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