Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
OI25_6787 | OI25_6788 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | Conserved hypothetical protein; [S] COG4944 Uncharacterized protein conserved in bacteria. | 0.950 |
OI25_6787 | OI25_6789 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | Hypothetical protein. | 0.414 |
OI25_6788 | OI25_6787 | Conserved hypothetical protein; [S] COG4944 Uncharacterized protein conserved in bacteria. | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | 0.950 |
OI25_6788 | OI25_6789 | Conserved hypothetical protein; [S] COG4944 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.414 |
OI25_6789 | OI25_6787 | Hypothetical protein. | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. | 0.414 |
OI25_6789 | OI25_6788 | Hypothetical protein. | Conserved hypothetical protein; [S] COG4944 Uncharacterized protein conserved in bacteria. | 0.414 |
OI25_6789 | OI25_6790 | Hypothetical protein. | Patatin-like phospholipase family protein; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. | 0.466 |
OI25_6790 | OI25_6789 | Patatin-like phospholipase family protein; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. | Hypothetical protein. | 0.466 |