STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_7082Putative lipoprotein transmembrane. (253 aa)    
Predicted Functional Partners:
OI25_5478
Subtilase family protein; [O] COG1404 Subtilisin-like serine proteases.
  
 
 0.738
OI25_783
Subtilase family protein; [O] COG1404 Subtilisin-like serine proteases.
  
 
 0.738
OI25_7083
tonB-siderophor: TonB-dependent siderophore receptor family protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
     
 0.619
OI25_7085
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
   
   0.466
OI25_7084
fecR family protein; [PT] COG3712 Fe2+-dicitrate sensor, membrane component.
     
 0.419
OI25_518
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.407
OI25_692
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
 
 0.407
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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