Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
OI25_1570 | OI25_7713 | Cytochrome C1 family protein; [C] COG3245 Cytochrome c5. | [Q] COG2132 Putative multicopper oxidases. | 0.494 |
OI25_4648 | OI25_7591 | [MU] COG1538 Outer membrane protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.822 |
OI25_4648 | OI25_7713 | [MU] COG1538 Outer membrane protein. | [Q] COG2132 Putative multicopper oxidases. | 0.785 |
OI25_4648 | OI25_7714 | [MU] COG1538 Outer membrane protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.822 |
OI25_4648 | OI25_7722 | [MU] COG1538 Outer membrane protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.821 |
OI25_7545 | OI25_7713 | ATPase-IB1_Cu: copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase. | [Q] COG2132 Putative multicopper oxidases. | 0.465 |
OI25_7591 | OI25_4648 | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | [MU] COG1538 Outer membrane protein. | 0.822 |
OI25_7591 | OI25_7712 | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | [MU] COG1538 Outer membrane protein. | 0.821 |
OI25_7591 | OI25_7713 | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | [Q] COG2132 Putative multicopper oxidases. | 0.784 |
OI25_7711 | OI25_7712 | Hypothetical protein. | [MU] COG1538 Outer membrane protein. | 0.780 |
OI25_7711 | OI25_7713 | Hypothetical protein. | [Q] COG2132 Putative multicopper oxidases. | 0.779 |
OI25_7711 | OI25_7714 | Hypothetical protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.602 |
OI25_7711 | OI25_7715 | Hypothetical protein. | copC domain protein; [R] COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC. | 0.452 |
OI25_7711 | OI25_7716 | Hypothetical protein. | Copper resistance D family protein; [P] COG1276 Putative copper export protein. | 0.454 |
OI25_7712 | OI25_7591 | [MU] COG1538 Outer membrane protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.821 |
OI25_7712 | OI25_7711 | [MU] COG1538 Outer membrane protein. | Hypothetical protein. | 0.780 |
OI25_7712 | OI25_7713 | [MU] COG1538 Outer membrane protein. | [Q] COG2132 Putative multicopper oxidases. | 0.949 |
OI25_7712 | OI25_7714 | [MU] COG1538 Outer membrane protein. | Copper binding periplasmic CusF family protein; [S] COG5569 Uncharacterized conserved protein. | 0.923 |
OI25_7712 | OI25_7715 | [MU] COG1538 Outer membrane protein. | copC domain protein; [R] COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC. | 0.462 |
OI25_7712 | OI25_7716 | [MU] COG1538 Outer membrane protein. | Copper resistance D family protein; [P] COG1276 Putative copper export protein. | 0.585 |
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