STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APD32412.1Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
APD32410.1
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.907
APD32411.1
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.815
APD32490.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.797
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.531
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
    
  0.505
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.499
APD32724.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.468
APD32831.1
Cell wall-anchored protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.464
APD32685.1
Tryptophan-rich sensory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.464
APD32415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.462
Your Current Organism:
Streptococcus iniae
NCBI taxonomy Id: 1346
Other names: ATCC 29178, CCUG 27303, CIP 102508, DSM 20576, LMG 14520, LMG:14520, S. iniae, Streptococcus shiloi, strain PW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.