STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS31073.19-cis-epoxycarotenoid dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
egtD
histidyl-tRNA synthetase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
   
 0.838
purD
Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.
   
  
 0.770
AKS34458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.756
AKS31067.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.755
AKS31074.1
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
AKS31339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.600
AKS33311.1
Citrate lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
      
 0.590
AKS31394.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.588
AKS33016.1
Citrate (pro-3S)-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
      
 0.587
AKS34802.1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
      
 0.584
Your Current Organism:
Mycolicibacterium goodii
NCBI taxonomy Id: 134601
Other names: ATCC 700504, CIP 106349, DSM 44492, JCM 12689, M. goodii, Mycobacterium goodii, strain MO69
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