AKS36221.1 protein (Mycolicibacterium goodii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKS36221.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)

Predicted Functional Partners:

AKS32053.1

0.915

AKS36222.1

0.829

AKS32052.1

0.685

AKS34969.1

0.669

AKS34944.1

0.653

AKS34971.1

0.651

AKS34830.1

0.650

AKS32452.1

0.644

AKS34943.1

0.632

AKS32533.1

0.626

Your Current Organism:

Mycolicibacterium goodii

NCBI taxonomy Id: 134601
Other names: ATCC 700504, CIP 106349, DSM 44492, JCM 12689, M. goodii, Mycobacterium goodii, strain MO69

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKS32052.1	AKS32053.1	AFA91_09415	AFA91_09425	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AKS32052.1	AKS36221.1	AFA91_09415	AFA91_09420	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
AKS32052.1	AKS36222.1	AFA91_09415	AFA91_09430	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AKS32053.1	AKS32052.1	AFA91_09425	AFA91_09415	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	0.518
AKS32053.1	AKS34971.1	AFA91_09425	AFA91_27205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein, ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AKS32053.1	AKS36221.1	AFA91_09425	AFA91_09420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AKS32053.1	AKS36222.1	AFA91_09425	AFA91_09430	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
AKS32452.1	AKS36221.1	AFA91_11850	AFA91_09420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AKS32533.1	AKS34971.1	AFA91_12350	AFA91_27205	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein, ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
AKS32533.1	AKS36221.1	AFA91_12350	AFA91_09420	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
AKS34830.1	AKS34971.1	AFA91_26345	AFA91_27205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein, ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AKS34830.1	AKS36221.1	AFA91_26345	AFA91_09420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AKS34830.1	AKS36222.1	AFA91_26345	AFA91_09430	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AKS34943.1	AKS34944.1	AFA91_27045	AFA91_27050	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AKS34943.1	AKS34971.1	AFA91_27045	AFA91_27205	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein, ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AKS34943.1	AKS36221.1	AFA91_27045	AFA91_09420	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AKS34943.1	AKS36222.1	AFA91_27045	AFA91_09430	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AKS34944.1	AKS34943.1	AFA91_27050	AFA91_27045	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AKS34944.1	AKS34971.1	AFA91_27050	AFA91_27205	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Substrate-binding protein, ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AKS34944.1	AKS36221.1	AFA91_27050	AFA91_09420	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About