STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS34371.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
AKS35438.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.600
AKS32562.1
Metal ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.586
AKS31319.1
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.575
AKS34034.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
AKS35180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.515
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.478
AKS34372.1
salK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.469
AKS34932.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.465
AKS32465.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.464
xylB-2
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
Your Current Organism:
Mycolicibacterium goodii
NCBI taxonomy Id: 134601
Other names: ATCC 700504, CIP 106349, DSM 44492, JCM 12689, M. goodii, Mycobacterium goodii, strain MO69
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