STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16749.1Beta-eliminating lyase; KEGG: fnu:FN0810 4.4e-87 low-specificity threonine aldolase K01620; Psort location: Cytoplasmic, score: 8.96. (342 aa)    
Predicted Functional Partners:
KXA13410.1
KEGG: ipo:Ilyop_1231 7.5e-124 L-threonine ammonia-lyase K01754; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.853
KXA13902.1
KEGG: coc:Coch_1233 2.9e-76 short-chain dehydrogenase/reductase SDR; K00540; Psort location: Cytoplasmic, score: 9.97; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.820
KXA16747.1
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.761
KXA16752.1
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 3.6e-06 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
       0.761
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.760
tmcAL
Cytidyltransferase domain protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
       0.760
KXA16751.1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C4210 3.1e-22 yicJ; transporter K03292; Psort location: CytoplasmicMembrane, score: 10.00.
       0.760
KXA16745.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: fnu:FN1163 5.6e-96 thioredoxin reductase K00384; Psort location: Cytoplasmic, score: 9.97.
    
  0.594
KXA16753.1
YigZ family protein; KEGG: fnu:FN1907 1.3e-64 thymidylate synthase; Psort location: Cytoplasmic, score: 9.97.
   
   0.581
KXA16746.1
Metallo-beta-lactamase domain protein; KEGG: fnu:FN1162 2.6e-66 hydroxyacylglutathione hydrolase K01069; Psort location: Cytoplasmic, score: 9.97.
       0.508
Your Current Organism:
Fusobacterium equinum
NCBI taxonomy Id: 134605
Other names: DSM 17476, F. equinum, Fusibacterium equinum, Fusobacterium equinum Dorsch et al. 2001, Fusobacterium equorum, JCM 11174, NCTC 13176, VPB 4027
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