STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA13290.1Sigma-70 region 2; KEGG: cnc:CNE_1c22830 1.3e-17 rpoS; DNA-directed RNA polymerase sigma-38 subunit RpoS K03087; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. (201 aa)    
Predicted Functional Partners:
KXA13291.1
Hypothetical protein.
       0.773
KXA13292.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXA13293.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.667
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
  
 0.642
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.639
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.593
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.577
KXA13298.1
Hypothetical protein.
       0.503
KXA13299.1
Sigma-70, region 4; KEGG: csc:Csac_1285 0.00027 RNA polymerase sigma-28 subunit FliA/WhiG K02405; Psort location: Cytoplasmic, score: 8.96.
      
0.503
Your Current Organism:
Fusobacterium equinum
NCBI taxonomy Id: 134605
Other names: DSM 17476, F. equinum, Fusibacterium equinum, Fusobacterium equinum Dorsch et al. 2001, Fusobacterium equorum, JCM 11174, NCTC 13176, VPB 4027
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.