STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA13139.1Sigma-54 interaction domain protein; KEGG: eci:UTI89_C4457 4.8e-58 glnG; nitrogen regulation protein NR(I) K07712; Psort location: Cytoplasmic, score: 9.97. (462 aa)    
Predicted Functional Partners:
KXA15783.1
KEGG: cbo:CBO0224 3.5e-46 hno; RNA polymerase factor sigma-54 K03092; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.841
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.793
KXA13136.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: pfe:PSF113_4167 2.1e-18 exbB; protein ExbB/TolQ K03561; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.790
KXA13141.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.786
KXA13688.1
KEGG: fnu:FN1421 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.783
KXA13628.1
Putative pyruvate synthase; KEGG: fnu:FN1421 1.8e-257 pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.783
KXA12563.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; KEGG: fnu:FN1170 9.1e-61 pyruvate-flavodoxin oxidoreductase K03737.
    
 0.783
KXA12466.1
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.783
KXA13138.1
TonB family domain protein; KEGG: mru:mru_0816 0.0020 hdrC; CoB--CoM heterodisulfide reductase subunit C HdrC K03390; Psort location: Cytoplasmic, score: 8.96.
       0.752
KXA13137.1
Transport energizing protein, ExbD/TolR family; KEGG: pfe:PSF113_4166 1.0e-07 exbD; protein ExbD/TolR K03559.
       0.720
Your Current Organism:
Fusobacterium equinum
NCBI taxonomy Id: 134605
Other names: DSM 17476, F. equinum, Fusibacterium equinum, Fusobacterium equinum Dorsch et al. 2001, Fusobacterium equorum, JCM 11174, NCTC 13176, VPB 4027
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