STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA12559.1Pyridine nucleotide-disulfide oxidoreductase; KEGG: gox:GOX1630 1.3e-07 oxidoreductase K00100; Psort location: Cytoplasmic, score: 8.96. (468 aa)    
Predicted Functional Partners:
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.777
KXA12557.1
KEGG: gym:GYMC10_1709 1.1e-44 ribosome biogenesis GTPase YqeH K06948; Psort location: Cytoplasmic, score: 8.96.
       0.687
KXA12558.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.687
KXA12556.1
Phage integrase, SAM-like domain protein; KEGG: bsr:I33_1800 1.1e-12 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
       0.683
trmFO
tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.624
KXA12553.1
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 8.5e-45 protein smf K04096; Psort location: Cytoplasmic, score: 8.96.
       0.572
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.572
KXA12561.1
KEGG: fnu:FN1172 3.2e-139 phosphate acetyltransferase K00625; Psort location: Cytoplasmic, score: 9.97.
       0.544
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.531
KXA12552.1
Tetratricopeptide repeat protein; KEGG: agr:AGROH133_12854 2.6e-05 O-linked GlcNAc transferase.
       0.531
Your Current Organism:
Fusobacterium equinum
NCBI taxonomy Id: 134605
Other names: DSM 17476, F. equinum, Fusibacterium equinum, Fusobacterium equinum Dorsch et al. 2001, Fusobacterium equorum, JCM 11174, NCTC 13176, VPB 4027
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