STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE91148.1Glycosyl Hydrolase Family 88. (407 aa)    
Predicted Functional Partners:
SHE91108.1
Alginate lyase.
     0.876
SHE91194.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.805
SHE86947.1
Protein of unknown function.
 
     0.743
SHE91013.1
Starch-binding associating with outer membrane.
 
     0.641
SHE86998.1
Gluconate 5-dehydrogenase.
  
     0.528
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.523
SHE90973.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.522
SHE91063.1
Hypothetical protein.
       0.503
SHE30615.1
Hypothetical protein.
 
     0.440
SHE91242.1
Glycosyl Hydrolase Family 88.
 
    
0.430
Your Current Organism:
Dysgonomonas macrotermitis
NCBI taxonomy Id: 1346286
Other names: D. macrotermitis, DSM 27370, Dysgonomonas macrotermitis Yang et al. 2014, Dysgonomonas sp. Dys-CH1, JCM 19375, strain Dys-CH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.