STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF88872.1TonB-linked outer membrane protein, SusC/RagA family. (1081 aa)    
Predicted Functional Partners:
SHF88900.1
Starch-binding associating with outer membrane.
 
     0.931
SHE72224.1
Susd and RagB outer membrane lipoprotein.
 
     0.748
SHF43511.1
Starch-binding associating with outer membrane.
 
     0.747
SHE99173.1
Starch-binding associating with outer membrane.
  
     0.740
SHG16287.1
Starch-binding associating with outer membrane.
 
     0.736
SHE43432.1
SusD family protein.
  
     0.716
SHE98785.1
Starch-binding associating with outer membrane.
  
     0.613
SHE91013.1
Starch-binding associating with outer membrane.
  
     0.600
SHF04229.1
Starch-binding associating with outer membrane.
  
     0.591
SHF29026.1
Iron complex outermembrane recepter protein.
  
     0.557
Your Current Organism:
Dysgonomonas macrotermitis
NCBI taxonomy Id: 1346286
Other names: D. macrotermitis, DSM 27370, Dysgonomonas macrotermitis Yang et al. 2014, Dysgonomonas sp. Dys-CH1, JCM 19375, strain Dys-CH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.