STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ60574.1Hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (235 aa)    
Predicted Functional Partners:
ERJ60575.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.678
fbp
Fructose-1,6-bisphosphatase; Catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FBPase class 1 family.
       0.592
ERJ58305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.544
rsmI
16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.543
ERJ60573.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.516
ERJ57266.1
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.419
ERJ61001.1
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.419
Your Current Organism:
Sphingobacterium paucimobilis
NCBI taxonomy Id: 1346330
Other names: S. paucimobilis HER1398, Sphingobacterium paucimobilis HER1398
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.