STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ocdPredicted ornithine cyclodeaminase, mu-crystallin homolog. (333 aa)    
Predicted Functional Partners:
ACPL_1000
Cysteine synthase.
  
 
 0.973
ocd-2
Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
  
 
0.927
ACPL_4122
Cysteine synthase.
  
 
 0.922
ACPL_1004
Hypothetical protein.
 
     0.813
ACPL_1006
Asparagine synthase (glutamine-hydrolyzing).
 
     0.807
ACPL_1002
Hypothetical protein.
       0.773
ACPL_1003
Hypothetical protein.
       0.773
ACPL_1005
Hypothetical protein.
       0.773
nrps1B
Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.755
nrps1A
Amino acid adenylation domain-containing protein; Non-ribosomal peptide synthetase modules and related proteins.
     
 0.721
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.