Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1068Lipoprotein lpqB. (609 aa)    
Predicted Functional Partners:
mtrB
Two-component system, OmpR family, sensor histidine kinase MtrB; Signal transduction histidine kinase.
 
    0.889
ACPL_1069
Hypothetical protein; Predicted amidophosphoribosyltransferases.
       0.843
ACPL_1066
Transcriptional regulatory protein yycF; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.767
ACPL_977
Myosin-XV.
  
     0.729
ACPL_6493
Collagen alpha-5(VI) chain.
  
     0.697
ACPL_8348
Collagen alpha-4(VI) chain; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases.
  
     0.647
ACPL_1312
Hypothetical protein.
  
     0.592
ACPL_1951
Membrane-bound metal-dependent hydrolase.
  
     0.591
ACPL_8083
Hypothetical protein.
  
    0.579
ACPL_6632
Hypothetical protein.
  
     0.561
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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