Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1145Superfamily I DNA and RNA helicases and helicase subunits. (431 aa)    
Predicted Functional Partners:
ACPL_1141
Hypothetical protein.
 
     0.872
ACPL_1140
Hypothetical protein.
 
     0.849
ACPL_1144
Hypothetical protein.
       0.667
ACPL_2644
Hypothetical protein.
  
    0.636
ACPL_6563
Hypothetical protein.
 
    0.609
ACPL_8011
Hypothetical protein.
  
    0.606
ACPL_3454
Hypothetical protein.
 
    0.601
wcnA
Putative peptidoglycan O-acetyltransferase yrhL; Predicted acyltransferases.
  
    0.571
ACPL_1028
Anaerobic sulfatase-maturating enzyme; Arylsulfatase regulator (Fe-S oxidoreductase).
  
   
 0.538
ACPL_1272
Hypothetical protein.
  
     0.534
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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