STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1180Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins. (309 aa)    
Predicted Functional Partners:
ACPL_400
Pectate lyase; Alpha-L-arabinofuranosidase.
  
     0.666
ACPL_6713
Hypothetical protein.
  
     0.592
ACPL_1179
Molybdenum cofactor sulfurase.
       0.556
zan-2
Zonadhesin; RTX toxins and related Ca2+-binding proteins.
  
     0.487
ACPL_4660
Putative lipoprotein; Uncharacterized protein containing LysM domain.
  
     0.482
ACPL_1178
Glucosamine-fructose-6-phosphate aminotransferase; Isomerizing; Transcriptional regulators.
 
     0.472
ACPL_4729
alpha-L-arabinofuranosidase B catalytic; O-Glycosyl hydrolase.
  
   
 0.445
ACPL_3004
RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.435
ACPL_4402
Hypothetical protein.
  
     0.422
celB
Cellulase; Endoglucanase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
   
 0.421
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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