phyB protein (Actinoplanes sp. SE50110) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

phyB

Phytochrome B; Signal transduction histidine kinase. (876 aa)

Predicted Functional Partners:

ACPL_1249

0.958

ACPL_1251

0.938

ACPL_1250

0.936

ACPL_830

0.782

ACPL_7761

0.781

ACPL_829

0.779

ACPL_6956

0.778

ACPL_7762

0.778

ACPL_8150

0.778

ACPL_2136

0.777

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1249	ACPL_1250	ACPL_1249	ACPL_1250	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	Hypothetical protein.	0.942
ACPL_1249	ACPL_1251	ACPL_1249	ACPL_1251	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	Translation initiation factor IF-2; Predicted GTPase.	0.977
ACPL_1249	ACPL_7761	ACPL_1249	ACPL_7761	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	Hypothetical protein.	0.812
ACPL_1249	ACPL_830	ACPL_1249	ACPL_830	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	Hypothetical protein.	0.812
ACPL_1249	phyB	ACPL_1249	ACPL_1248	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	Phytochrome B; Signal transduction histidine kinase.	0.958
ACPL_1250	ACPL_1249	ACPL_1250	ACPL_1249	Hypothetical protein.	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.942
ACPL_1250	ACPL_1251	ACPL_1250	ACPL_1251	Hypothetical protein.	Translation initiation factor IF-2; Predicted GTPase.	0.934
ACPL_1250	ACPL_2136	ACPL_1250	ACPL_2136	Hypothetical protein.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.811
ACPL_1250	ACPL_6956	ACPL_1250	ACPL_6956	Hypothetical protein.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.800
ACPL_1250	ACPL_7762	ACPL_1250	ACPL_7762	Hypothetical protein.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.806
ACPL_1250	ACPL_8150	ACPL_1250	ACPL_8150	Hypothetical protein.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.808
ACPL_1250	ACPL_829	ACPL_1250	ACPL_829	Hypothetical protein.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.806
ACPL_1250	phyB	ACPL_1250	ACPL_1248	Hypothetical protein.	Phytochrome B; Signal transduction histidine kinase.	0.936
ACPL_1251	ACPL_1249	ACPL_1251	ACPL_1249	Translation initiation factor IF-2; Predicted GTPase.	roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.977
ACPL_1251	ACPL_1250	ACPL_1251	ACPL_1250	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein.	0.934
ACPL_1251	ACPL_2136	ACPL_1251	ACPL_2136	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.903
ACPL_1251	ACPL_6956	ACPL_1251	ACPL_6956	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.904
ACPL_1251	ACPL_7761	ACPL_1251	ACPL_7761	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein.	0.791
ACPL_1251	ACPL_7762	ACPL_1251	ACPL_7762	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.904
ACPL_1251	ACPL_8150	ACPL_1251	ACPL_8150	Translation initiation factor IF-2; Predicted GTPase.	Hypothetical protein; Uncharacterized distant relative of homeotic protein bithoraxoid.	0.903