Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1249roadblock/LC7 family protein; Uncharacterized distant relative of homeotic protein bithoraxoid. (139 aa)    
Predicted Functional Partners:
ACPL_1251
Translation initiation factor IF-2; Predicted GTPase.
 
 
 0.977
phyB
Phytochrome B; Signal transduction histidine kinase.
 
     0.958
ACPL_1250
Hypothetical protein.
 
   
 0.942
ACPL_2138
Protein of unknown function ATP binding protein; Predicted GTPase.
 
 
 0.915
ACPL_6954
GTP-binding protein lepA; Predicted GTPase.
 
 
 0.915
ACPL_7760
Elongation factor G 1; Predicted GTPase.
 
 
 0.915
ACPL_8152
GTP-binding protein lepA; Predicted GTPase.
 
 
 0.915
ACPL_831
Translation initiation factor IF-2; Predicted GTPase.
 
 
 0.915
ACPL_7761
Hypothetical protein.
 
   
 0.812
ACPL_830
Hypothetical protein.
 
   
 0.812
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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