STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (394 aa)    
Predicted Functional Partners:
xylB-2
Xylulokinase; Glycerol kinase.
 
 
 0.999
xylB
Xylulokinase; Glycerol kinase.
  
 
 0.955
xyoA
FAD linked oxidase domain protein; FAD/FMN-containing dehydrogenases.
 
  
  0.923
ACPL_6369
Threonine dehydrogenase and related Zn-dependent dehydrogenases.
     
 0.911
frk2
Fructokinase; Sugar kinases, ribokinase family.
    
 0.907
pfkB
Fructokinase; Sugar kinases, ribokinase family.
    
 0.907
ACPL_3627
Transcriptional regulator/sugar kinase.
    
 0.829
ACPL_1674
Glucokinase; Transcriptional regulator/sugar kinase.
    
 0.815
glcK
ROK family protein; Transcriptional regulator/sugar kinase.
    
 0.815
ACPL_7998
Glucokinase; Transcriptional regulator/sugar kinase.
    
 0.815
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.