STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB-2Xylulokinase; Glycerol kinase. (466 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.999
araD
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.940
xylB
Xylulokinase; Glycerol kinase.
 
  
 
0.933
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.925
ACPL_1255
Hexokinase-2; Transcriptional regulator/sugar kinase.
 
  
 0.802
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
  
 0.681
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.666
tkt
Transketolase; Belongs to the transketolase family.
  
 
 0.622
tpiA
Triosephosphate isomerase (TIM); Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.597
ACPL_7488
Transketolase, N-terminal subunit.
  
 
 0.578
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.