ACPL_1270 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_1270

Uncharacterized protein. (106 aa)

Predicted Functional Partners:

ACPL_1271

0.839

ACPL_2871

0.733

ACPL_5617

0.733

ACPL_1272

0.523

ACPL_1796

0.465

ACPL_1643

0.451

ACPL_7391

0.435

ctaB

0.415

ACPL_7246

0.408

ACPL_1273

0.402

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1270	ACPL_1271	ACPL_1270	ACPL_1271	Uncharacterized protein.	Uncharacterized protein; Glucitol operon activator.	0.839
ACPL_1270	ACPL_1272	ACPL_1270	ACPL_1272	Uncharacterized protein.	Hypothetical protein.	0.523
ACPL_1270	ACPL_1273	ACPL_1270	ACPL_1273	Uncharacterized protein.	yngL-like uncharacterized protein.	0.402
ACPL_1270	ACPL_1643	ACPL_1270	ACPL_1643	Uncharacterized protein.	Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	0.451
ACPL_1270	ACPL_1796	ACPL_1270	ACPL_1796	Uncharacterized protein.	Hypothetical protein.	0.465
ACPL_1270	ACPL_2871	ACPL_1270	ACPL_2871	Uncharacterized protein.	Putative copper export protein.	0.733
ACPL_1270	ACPL_5617	ACPL_1270	ACPL_5617	Uncharacterized protein.	Uncharacterized protein, homolog of Cu resistance protein CopC.	0.733
ACPL_1270	ACPL_7246	ACPL_1270	ACPL_7246	Uncharacterized protein.	Hypothetical protein; Predicted acetyltransferase.	0.408
ACPL_1270	ACPL_7391	ACPL_1270	ACPL_7391	Uncharacterized protein.	Methionine synthase vitamin-B12 independent.	0.435
ACPL_1270	ctaB	ACPL_1270	ACPL_1866	Uncharacterized protein.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.415
ACPL_1271	ACPL_1270	ACPL_1271	ACPL_1270	Uncharacterized protein; Glucitol operon activator.	Uncharacterized protein.	0.839
ACPL_1271	ACPL_1272	ACPL_1271	ACPL_1272	Uncharacterized protein; Glucitol operon activator.	Hypothetical protein.	0.660
ACPL_1271	ACPL_1273	ACPL_1271	ACPL_1273	Uncharacterized protein; Glucitol operon activator.	yngL-like uncharacterized protein.	0.595
ACPL_1272	ACPL_1270	ACPL_1272	ACPL_1270	Hypothetical protein.	Uncharacterized protein.	0.523
ACPL_1272	ACPL_1271	ACPL_1272	ACPL_1271	Hypothetical protein.	Uncharacterized protein; Glucitol operon activator.	0.660
ACPL_1272	ACPL_1273	ACPL_1272	ACPL_1273	Hypothetical protein.	yngL-like uncharacterized protein.	0.604
ACPL_1273	ACPL_1270	ACPL_1273	ACPL_1270	yngL-like uncharacterized protein.	Uncharacterized protein.	0.402
ACPL_1273	ACPL_1271	ACPL_1273	ACPL_1271	yngL-like uncharacterized protein.	Uncharacterized protein; Glucitol operon activator.	0.595
ACPL_1273	ACPL_1272	ACPL_1273	ACPL_1272	yngL-like uncharacterized protein.	Hypothetical protein.	0.604
ACPL_1643	ACPL_1270	ACPL_1643	ACPL_1270	Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Uncharacterized protein.	0.451