STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1364Collagen alpha-4(VI) chain; Superfamily II DNA and RNA helicases. (441 aa)    
Predicted Functional Partners:
zan
Zonadhesin; Type V secretory pathway, adhesin AidA.
   
 0.889
ACPL_8250
Hypothetical protein.
  
    0.839
ACPL_562
Uncharacterized protein conserved in bacteria.
  
  
 0.810
ACPL_2264
Fibronectin type 3 domain-containing protein.
 
 
 0.800
ACPL_8035
Transmembrane and TPR repeat-containing protein 4; FOG: TPR repeat.
 
 
 0.793
ACPL_704
Hypothetical protein.
  
  
 0.787
ACPL_191
Collagen alpha-2(I) chain; Ribonucleases G and E.
 
 
 0.786
ACPL_7758
Mini-circle putative transposase for IS117.
 
     0.782
ACPL_7565
Pentatricopeptide repeat-containing protein; FOG: TPR repeat.
 
 
 0.778
ACPL_720
Protein Daple; Type V secretory pathway, adhesin AidA.
  
     0.774
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.