STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufESufE protein probably involved in Fe-S center assembly. (139 aa)    
Predicted Functional Partners:
sseA
Rhodanese-related sulfurtransferase.
 
     0.810
ACPL_136
Uncharacterized protein; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
  
    0.747
csdB
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.631
ACPL_2281
Selenocysteine lyase.
  
 
 0.631
ACPL_3848
Selenocysteine lyase.
  
 
 0.631
ACPL_4950
Cysteine desulfurase family protein; Selenocysteine lyase.
  
 
 0.631
sufS
Aminotransferase class V; Selenocysteine lyase.
  
 
 0.631
cefD
Aminotransferase class V; Selenocysteine lyase.
  
 
 0.631
ACPL_1874
Spermidine/putrescine import ATP-binding protein potA; ABC-type oligopeptide transport system, ATPase component.
  
 
 0.555
ACPL_138
Inosine-5'-monophosphate dehydrogenase; FOG: CBS domain.
       0.514
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.