STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1390ComE operon protein 1; Transcriptional accessory protein. (282 aa)    
Predicted Functional Partners:
ACPL_1391
ComE operon protein 3; Predicted membrane metal-binding protein.
 
  
 0.924
ACPL_1330
Uncharacterized protein; Predicted acetyltransferase involved in intracellular survival and related acetyltransferases.
  
    0.687
tapC
Type IV pilus assembly protein tapC; Type II secretory pathway, component PulF.
  
  
 0.664
ACPL_1392
DNA polymerase III, delta subunit.
     
 0.649
ACPL_5319
Membrane-bound protein lytR; Transcriptional regulator.
 
     0.636
ACPL_2049
Cell envelope-related transcriptional attenuator; Transcriptional regulator.
 
     0.619
ACPL_1393
Collagen alpha-5(VI) chain; PPE-repeat proteins.
 
     0.613
pulE
General secretion pathway protein E; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
  
 0.597
ACPL_7592
Membrane-bound protein lytR; Transcriptional regulator.
 
     0.562
ACPL_5196
Membrane-bound protein lytR; Transcriptional regulator.
 
     0.502
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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