STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1427Putative permease ybaF; ABC-type cobalt transport system, permease component CbiQ and related transporters. (263 aa)    
Predicted Functional Partners:
ACPL_1428
Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.998
ACPL_2439
Phosphate import ATP-binding protein pstB; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 0.991
ACPL_1429
Putative HMP/thiamine permease protein ykoE; Predicted membrane protein.
 
  
 0.988
bioY
Putative biotin transporter bioY.
  
 0.980
ACPL_2441
Hypothetical protein.
  
 
 0.843
cbiM
Protein cbiM; ABC-type Co2+ transport system, permease component.
  
 
 0.843
cobE
Protein cobE; Cobalamin biosynthesis protein CbiG.
  
  
 0.760
oppD
Glutathione import ATP-binding protein gsiA; ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.637
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.608
cobL
precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase; Precorrin-6B methylase 1.
  
  
 0.593
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.