Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_1428Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. (467 aa)    
Predicted Functional Partners:
ACPL_1427
Putative permease ybaF; ABC-type cobalt transport system, permease component CbiQ and related transporters.
 0.999
ACPL_1429
Putative HMP/thiamine permease protein ykoE; Predicted membrane protein.
 
  
 0.978
ACPL_882
Peptide/nickel transport system substrate-binding protein; ABC-type dipeptide transport system, periplasmic component.
  
 0.931
ACPL_6678
Methionine import ATP-binding protein metN; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
 0.927
ACPL_2440
Uncharacterized protein; ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
 0.923
ACPL_2439
Phosphate import ATP-binding protein pstB; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
 0.870
ACPL_2518
Peptide/nickel transport system substrate-binding protein; ABC-type dipeptide transport system, periplasmic component.
  
 0.856
ACPL_2191
Periplasmic oligopeptide-binding protein; ABC-type dipeptide transport system, periplasmic component.
  
 0.839
pdr1-3
Pleiotropic drug resistance protein 1; ABC-type multidrug transport system, permease component.
  
 
 0.835
ACPL_2955
Glutathione-binding protein gsiB; ABC-type dipeptide transport system, periplasmic component.
  
 0.834
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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