STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodJNodulation protein J; ABC-type multidrug transport system, permease component. (269 aa)    
Predicted Functional Partners:
ACPL_1455
Spermidine/putrescine import ATP-binding protein potA; ABC-type spermidine/putrescine transport systems, ATPase components.
 
 
  0.984
ACPL_1456
Nodulation protein J; ABC-type multidrug transport system, permease component.
 
  
 
0.974
ACPL_1454
Hypothetical protein.
       0.581
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.566
dgt
dGTPase; dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
  
    0.496
pdr1-4
Pleiotropic drug resistance protein 1; ABC-type multidrug transport system, permease component.
 
  
  0.475
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
     
 0.453
pdr1
Pleiotropic drug resistance protein 1; ABC-type multidrug transport system, permease component.
  
  
  0.436
ACPL_1158
Hippocampus abundant transcript 1 protein; Sugar phosphate permease.
  
     0.416
ACPL_3810
Hypothetical protein.
  
     0.415
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.