Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_1499Nephrocystin-3; FOG: TPR repeat. (1309 aa)    
Predicted Functional Partners:
pclO-2
Protein piccolo; Type V secretory pathway, adhesin AidA.
  
 
 0.804
ACPL_1500
Hypothetical protein.
       0.747
ACPL_4742
alpha-L-arabinofuranosidase B catalytic; Endoglucanase.
  
     0.683
ACPL_1135
Hypothetical protein.
 
     0.662
ACPL_4741
Hypothetical protein.
  
     0.641
ACPL_5972
Hypothetical protein; Predicted NTPase (NACHT family).
  
     0.622
ACPL_4729
alpha-L-arabinofuranosidase B catalytic; O-Glycosyl hydrolase.
  
     0.614
ACPL_4519
Cellulose-binding family II; Alpha-L-arabinofuranosidase.
  
     0.603
ACPL_2739
alpha-L-arabinofuranosidase B catalytic.
  
     0.578
fliG
Flagellar motor switch protein.
  
  
 0.571
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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