STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1503Predicted protein-tyrosine phosphatase. (150 aa)    
Predicted Functional Partners:
ACPL_3161
Hypothetical protein.
    
 0.791
ACPL_6712
Serine/threonine protein kinase.
    
 0.791
dnaK-3
Molecular chaperone.
   
 0.774
lepA
GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.735
ACPL_8205
Hypothetical protein.
   
 0.568
argS
Arginyl-tRNA synthetase.
  
  
 0.521
ACPL_3980
Putative WD repeat-containing protein; FOG: WD40 repeat.
  
 0.516
ACPL_8364
Putative WD repeat-containing protein; FOG: WD40 repeat.
  
 0.516
ACPL_4713
Hypothetical protein.
 
 
 0.486
ACPL_6604
Hypothetical protein.
  
     0.475
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.