ACPL_1534 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

ACPL_1534

Uncharacterized protein. (143 aa)

Predicted Functional Partners:

ahpE

0.779

ACPL_7246

0.759

ACPL_7111

0.753

ACPL_1052

0.720

ACPL_7391

0.716

ACPL_125

0.707

rbpA-2

0.705

ACPL_538

0.694

ACPL_481

0.677

ACPL_1870

0.652

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1052	ACPL_125	ACPL_1052	ACPL_125	Uncharacterized protein conserved in bacteria.	Uncharacterized protein.	0.533
ACPL_1052	ACPL_1534	ACPL_1052	ACPL_1534	Uncharacterized protein conserved in bacteria.	Uncharacterized protein.	0.720
ACPL_1052	ACPL_538	ACPL_1052	ACPL_538	Uncharacterized protein conserved in bacteria.	Uncharacterized protein.	0.521
ACPL_1052	ACPL_7111	ACPL_1052	ACPL_7111	Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.510
ACPL_1052	ACPL_7391	ACPL_1052	ACPL_7391	Uncharacterized protein conserved in bacteria.	Methionine synthase vitamin-B12 independent.	0.513
ACPL_1052	rbpA-2	ACPL_1052	ACPL_2796	Uncharacterized protein conserved in bacteria.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.475
ACPL_125	ACPL_1052	ACPL_125	ACPL_1052	Uncharacterized protein.	Uncharacterized protein conserved in bacteria.	0.533
ACPL_125	ACPL_1534	ACPL_125	ACPL_1534	Uncharacterized protein.	Uncharacterized protein.	0.707
ACPL_125	ACPL_481	ACPL_125	ACPL_481	Uncharacterized protein.	Type II secretion system protein; Flp pilus assembly protein TadC.	0.430
ACPL_125	ACPL_538	ACPL_125	ACPL_538	Uncharacterized protein.	Uncharacterized protein.	0.749
ACPL_125	ACPL_7111	ACPL_125	ACPL_7111	Uncharacterized protein.	Hypothetical protein.	0.528
ACPL_125	rbpA-2	ACPL_125	ACPL_2796	Uncharacterized protein.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.512
ACPL_1534	ACPL_1052	ACPL_1534	ACPL_1052	Uncharacterized protein.	Uncharacterized protein conserved in bacteria.	0.720
ACPL_1534	ACPL_125	ACPL_1534	ACPL_125	Uncharacterized protein.	Uncharacterized protein.	0.707
ACPL_1534	ACPL_1870	ACPL_1534	ACPL_1870	Uncharacterized protein.	Predicted transcriptional regulator.	0.652
ACPL_1534	ACPL_481	ACPL_1534	ACPL_481	Uncharacterized protein.	Type II secretion system protein; Flp pilus assembly protein TadC.	0.677
ACPL_1534	ACPL_538	ACPL_1534	ACPL_538	Uncharacterized protein.	Uncharacterized protein.	0.694
ACPL_1534	ACPL_7111	ACPL_1534	ACPL_7111	Uncharacterized protein.	Hypothetical protein.	0.753
ACPL_1534	ACPL_7246	ACPL_1534	ACPL_7246	Uncharacterized protein.	Hypothetical protein; Predicted acetyltransferase.	0.759
ACPL_1534	ACPL_7391	ACPL_1534	ACPL_7391	Uncharacterized protein.	Methionine synthase vitamin-B12 independent.	0.716