STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1599Secretion protein snm4. (467 aa)    
Predicted Functional Partners:
ACPL_1598
Hypothetical protein.
 
 
 
 0.963
ACPL_1600
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 0.926
ACPL_8097
Protein essC; DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 0.854
ACPL_6098
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 0.851
ACPL_5040
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 0.842
ACPL_1603
Otogelin.
 
   
 0.717
ACPL_3537
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.672
ACPL_5863
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.669
ACPL_1584
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.655
ACPL_1602
Hypothetical protein.
 
     0.632
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.