ACPL_1633 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ACPL_1633

Uncharacterized protein. (206 aa)

Predicted Functional Partners:

ACPL_1606

0.746

rbpA-2

0.743

ACPL_7111

0.740

ACPL_405

0.722

murA

0.714

ACPL_7107

0.714

ACPL_7119

0.708

ACPL_5070

0.681

ACPL_235

0.677

ACPL_1392

0.655

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1392	ACPL_1606	ACPL_1392	ACPL_1606	DNA polymerase III, delta subunit.	Uncharacterized protein.	0.690
ACPL_1392	ACPL_1633	ACPL_1392	ACPL_1633	DNA polymerase III, delta subunit.	Uncharacterized protein.	0.655
ACPL_1392	ACPL_235	ACPL_1392	ACPL_235	DNA polymerase III, delta subunit.	Hypothetical protein.	0.684
ACPL_1392	ACPL_405	ACPL_1392	ACPL_405	DNA polymerase III, delta subunit.	Phosphoglycerate mutase; Fructose-2,6-bisphosphatase.	0.741
ACPL_1392	ACPL_5070	ACPL_1392	ACPL_5070	DNA polymerase III, delta subunit.	Predicted transcriptional regulators.	0.799
ACPL_1392	ACPL_7107	ACPL_1392	ACPL_7107	DNA polymerase III, delta subunit.	Hypothetical protein.	0.713
ACPL_1392	ACPL_7111	ACPL_1392	ACPL_7111	DNA polymerase III, delta subunit.	Hypothetical protein.	0.724
ACPL_1392	ACPL_7119	ACPL_1392	ACPL_7119	DNA polymerase III, delta subunit.	Hypothetical protein.	0.735
ACPL_1392	rbpA-2	ACPL_1392	ACPL_2796	DNA polymerase III, delta subunit.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.748
ACPL_1606	ACPL_1392	ACPL_1606	ACPL_1392	Uncharacterized protein.	DNA polymerase III, delta subunit.	0.690
ACPL_1606	ACPL_1633	ACPL_1606	ACPL_1633	Uncharacterized protein.	Uncharacterized protein.	0.746
ACPL_1606	ACPL_405	ACPL_1606	ACPL_405	Uncharacterized protein.	Phosphoglycerate mutase; Fructose-2,6-bisphosphatase.	0.652
ACPL_1606	ACPL_5070	ACPL_1606	ACPL_5070	Uncharacterized protein.	Predicted transcriptional regulators.	0.737
ACPL_1606	ACPL_7107	ACPL_1606	ACPL_7107	Uncharacterized protein.	Hypothetical protein.	0.592
ACPL_1606	ACPL_7111	ACPL_1606	ACPL_7111	Uncharacterized protein.	Hypothetical protein.	0.719
ACPL_1606	ACPL_7119	ACPL_1606	ACPL_7119	Uncharacterized protein.	Hypothetical protein.	0.766
ACPL_1606	rbpA-2	ACPL_1606	ACPL_2796	Uncharacterized protein.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.751
ACPL_1633	ACPL_1392	ACPL_1633	ACPL_1392	Uncharacterized protein.	DNA polymerase III, delta subunit.	0.655
ACPL_1633	ACPL_1606	ACPL_1633	ACPL_1606	Uncharacterized protein.	Uncharacterized protein.	0.746
ACPL_1633	ACPL_235	ACPL_1633	ACPL_235	Uncharacterized protein.	Hypothetical protein.	0.677